
Help! There is a comet in my computer! 12
Figure 6. Geometric calibration of the image analysis system. We record an image of a micrometer
ruler under a microscope with a camera and then measure the distance between the micrometer
markings on the recorded image. In this case, the scaling factor is 200µm / 375 pixels = 0.53 µm
per pixel.
Note that the objective magnification is not the only parameter that affects the scaling of
images. In some microscopes, additional magnification lenses can be either inserted or
removed from the optical path. Another important parameter is binning, a camera setting
that we will discuss later (see chapter Binning, page 40). A separate geometric calibration
is needed for all combinations of settings of the image analysis system (on the
microscope, the camera or in the software) that affect image scaling.
3.4 Measurement of geometric parameters
Let us assume that the scaling factor for our model image is 1.6 µm per pixel. We can
calculate that the tail length of 14 pixels corresponds to 22.4 µm, so the tail is now
measured in absolute units. Other geometric parameters of the comet, such as the length
of the comet, the length of the head, the area of the comet, the area of the head and the area
of the tail can be measured using the same procedure of counting the pixels with a
consideration for the scaling factor of the image. These parameters describe lengths and
areas and are called geometric parameters.
200
m = 375 pixels
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